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04-23-2003 07:04 AM
04-23-2003 07:04 AM
segmentation fault
can anyone assit me with this problem I am having with the attached perl script.
SELECT probeset_id, accession, spot_id, chip_name, score, hit_length, pct_identity
FROM auto_annotation, probeset
WHERE subject = 28382 AND
subject_code = 2 AND
sequence_code = 1 AND
sequence_id = spot_id
206091_at NM_002381.2 36931 HG-U133A 87.7 44 100
rc_AI639164_at AI639164 8275 RG-U34A 50.1 25 100
disconnected
********** Internal heap ERROR 17112 addr=0x1029db50 *********
***** Dump of memory around addr 0x1029db50:
1029D950 00000000 00000000 00000000 00000000 [................]
Repeat 24 times
1029DAE0 00000000 00000000 C0B38F00 00000051 [...............Q]
1029DAF0 00000000 1029CB08 00000000 10295AB0 [.....).......)Z.]
1029DB00 00000000 1029CA88 00000000 00000000 [.....)..........]
1029DB10 30B38F00 00000029 00000000 1029DAE8 [0......).....)..]
1029DB20 00000000 00000000 00000000 00000000 [................]
1029DB30 3F000000 00000000 30B38F00 00000029 [?.......0......)]
1029DB40 00000000 1029CB08 00000000 00000000 [.....)..........]
1029DB50 00000000 00000000 00000000 00000000 [................]
1029DB60 00000000 1025EF00 00000000 10295A38 [.....%.......)Z8]
1029DB70 00000000 1029CAF8 D0B38F00 00001031 [.....).........1]
1029DB80 00000000 00000000 00000000 1029CB18 [.............)..]
1029DB90 00000000 1029EBF8 00000000 00000000 [.....)..........]
1029DBA0 00000000 00000000 00000000 00000000 [................]
Repeat 26 times
******************************************************
HEAP DUMP heap name="Alloc environm" desc=0x1025ef00
extent sz=0x1040 alt=64 het=32767 rec=0 flg=3 opc=3
parent=0 owner=0 nex=0 xsz=0x1040
EXTENT 0
Chunk 102a31e0 sz= 4024 free " "
Chunk 102a4198 sz= 48 freeable assoc with mark prv=0 nxt=0
Chunk 102a41c8 sz= 72 free " "
EXTENT 1
Chunk 1029ebc0 sz= 17928 free " "
EXTENT 2
ERROR extent contains wrong ds 1029cb08
Chunk 1029db50 sz= 0 ERROR, BAD MAGIC NUMBER (0)
Total heap size = 22072
FREE LISTS:
Bucket 0 size=288
Chunk 102950a8 sz= 504 free " "
Chunk 102a41c8 sz= 72 free " "
Bucket 1 size=544
Bucket 2 size=1056
Chunk 1029ebc0 sz= 17928 free " "
Chunk 1026f680 sz= 1584 free " "
Chunk 10270680 sz= 17792 free " "
Chunk 10296860 sz= 1312 free " "
Chunk 102a31e0 sz= 4024 free " "
Total free space = 43216
UNPINNED RECREATABLE CHUNKS (lru first):
PERMANENT CHUNKS:
Chunk 1026f650 sz= 48 perm "perm " alo=48
Permanent space = 48
******************************************************
Hla: 0
Segmentation fault (core dumped)
SELECT probeset_id, accession, spot_id, chip_name, score, hit_length, pct_identity
FROM auto_annotation, probeset
WHERE subject = 28382 AND
subject_code = 2 AND
sequence_code = 1 AND
sequence_id = spot_id
206091_at NM_002381.2 36931 HG-U133A 87.7 44 100
rc_AI639164_at AI639164 8275 RG-U34A 50.1 25 100
disconnected
********** Internal heap ERROR 17112 addr=0x1029db50 *********
***** Dump of memory around addr 0x1029db50:
1029D950 00000000 00000000 00000000 00000000 [................]
Repeat 24 times
1029DAE0 00000000 00000000 C0B38F00 00000051 [...............Q]
1029DAF0 00000000 1029CB08 00000000 10295AB0 [.....).......)Z.]
1029DB00 00000000 1029CA88 00000000 00000000 [.....)..........]
1029DB10 30B38F00 00000029 00000000 1029DAE8 [0......).....)..]
1029DB20 00000000 00000000 00000000 00000000 [................]
1029DB30 3F000000 00000000 30B38F00 00000029 [?.......0......)]
1029DB40 00000000 1029CB08 00000000 00000000 [.....)..........]
1029DB50 00000000 00000000 00000000 00000000 [................]
1029DB60 00000000 1025EF00 00000000 10295A38 [.....%.......)Z8]
1029DB70 00000000 1029CAF8 D0B38F00 00001031 [.....).........1]
1029DB80 00000000 00000000 00000000 1029CB18 [.............)..]
1029DB90 00000000 1029EBF8 00000000 00000000 [.....)..........]
1029DBA0 00000000 00000000 00000000 00000000 [................]
Repeat 26 times
******************************************************
HEAP DUMP heap name="Alloc environm" desc=0x1025ef00
extent sz=0x1040 alt=64 het=32767 rec=0 flg=3 opc=3
parent=0 owner=0 nex=0 xsz=0x1040
EXTENT 0
Chunk 102a31e0 sz= 4024 free " "
Chunk 102a4198 sz= 48 freeable assoc with mark prv=0 nxt=0
Chunk 102a41c8 sz= 72 free " "
EXTENT 1
Chunk 1029ebc0 sz= 17928 free " "
EXTENT 2
ERROR extent contains wrong ds 1029cb08
Chunk 1029db50 sz= 0 ERROR, BAD MAGIC NUMBER (0)
Total heap size = 22072
FREE LISTS:
Bucket 0 size=288
Chunk 102950a8 sz= 504 free " "
Chunk 102a41c8 sz= 72 free " "
Bucket 1 size=544
Bucket 2 size=1056
Chunk 1029ebc0 sz= 17928 free " "
Chunk 1026f680 sz= 1584 free " "
Chunk 10270680 sz= 17792 free " "
Chunk 10296860 sz= 1312 free " "
Chunk 102a31e0 sz= 4024 free " "
Total free space = 43216
UNPINNED RECREATABLE CHUNKS (lru first):
PERMANENT CHUNKS:
Chunk 1026f650 sz= 48 perm "perm " alo=48
Permanent space = 48
******************************************************
Hla: 0
Segmentation fault (core dumped)
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